Partial
list of selected publications on theoretical
biology and bioinformatics
A. Papers
1. The interaction between polarized electron
and chiral molecule. Scientia Sinica B28:
1265 (1985). Wang JY & Luo
2. Why are there four bases in DNA? Origins
of Life 16: 267-268 (1986)
3. The S4 symmetry breaking of mutation
and the terminators. Science Bulletin
30:1056-1058 (1986). Luo & Li QZ
4. Conformation dynamics of macromolecules.
Int J Quant Chem 32:435-450 (1987)
5. Code - sequence - conformation - dynamics
: An informal eassy on theoretical biophysics.
Exploration of Nature 7: 9-14 (1988) (in
Chinese)
6. Informational parameters of nucleic
acids & molecular evolution. J. Theor
Biol 130:351-361 (1988). Luo, Tsai L &
Zhou YM
7. Fractal dimension of nucleic acid and
its relation to evolutionary level. Chinese
Physics Letters 5 : 421-424 (1988) Luo
& Tsai L
8. Renyi entropy of nucleic acid sequence
and its relation to evolution. Acta Sci.
Natur. Univ. Intramongolicae 18, 733-737
(1987) (in Chinese) Luo & Tsai L
9. The degeneracy rule of genetic code.
Origins of Life 18:65-70 (1988)
10. The distribution of amino acids in
the genetic code. Origins of Life 19:621-
631 (1989)
11. A statistical theory of amino acid
mutation. Origins of Life 20: 419- 424
(1990).
Luo & Zhou YM
12. A model of evolution of molecular
sequences. Physical Review A 41:5441-
5450 (1990).
Luo, Tsai L & Lee WJ
13. Non-homogeneous informational parameters
of coding regions and molecular evolution.
Acta Sci. Natur. Univ. Intramongolicae
21, 229-234 (1990) (in Chinese) Luo &
Shengli
14. An evolutionary model of nucleic acid
sequence -
The model of inflation-mutation-selection.
Evolutionary Theory 10: 75-81 (1991).
15. Statistical correlation of nucleotides
in protein coding DNA sequences Bull Math
Biol 52: 345-353 (1991) Luo & Li H
16. Conserved sites of nucleotide sequence
and the local deviation of double helix
structure. Acta Sci. Natur. Univ. Intramongolicae
22, 234-247 (1991) (in Chinese) Shengli
& Luo
17. A stochastic evolutionary model of
molecular sequences. J. Theor Biol 157:
83-94 (1992).
Luo & Trainor
18. The statistical analysis of repeated
fragments in nucleic acid sequences. Acta
Biophys. Sinica. 8: 581-584 (1992) Zhou
YM & Luo
19. The symmetry of genetic code and the
hydrophobicity of amino acids. Acta Sci.
Natur. Univ. Intramongolicae 23, 392-399
(1992); In : Collected Works on Theoretical
Biophysics (Inner Mongolia University
Press, 1997) pp124-128.
20. An asymmetrical between pre- and post-
synapse neural network model. Acta Sci.
Natur. Univ. Intramongolicae 21, 387-390
(1990).; 23, 529-533(1992) (in Chinese)
Luo, Li QZ, & Liao SX
21. On complexity of finite sequences.
Nuovo Cimento B108: 83-92 (1993).
22. Investigation of secondary structure
of protein based on statistical mechanics.
Chinese Biochemical J. Special issue p.6
(1993) (in Chinese)
23. The kinetic theory of thermal hysteresis
of a macromolecule solution. Chemical
Physics Letters 216: 453-457 (1993). Li
QZ & Luo
24. Further discussion on the thermal
hysteresis of the ice growth inhibitor.
Chemical Physics Letters 223: 181-184
(1994). Li QZ & Luo
25. A note on winding number statistics.
Phys. Letters A 196:143-146 (1994) Luo,
Ma KJ.
26. Quantum transition between topological
states and DNA unwinding. Acta Sci. Natur.
Univ. Intramongolicae 26, 496-499 (1995).
27. A mathematical model on competition
of several species for one resource. Acta
Sci. Natur. Univ. Intramongolicae 25,
645-651 (1994); In: Collected Works on
Theoretical Biophysics (Inner Mongolia
University Press, 1997) pp478-484. . Lee
WJ & Luo
28. A mathematical model on metastasis
of tumor cells. Acta Sci. Natur. Univ.
Intramongolicae 25, 638-644 (1994); 26,749-752
(1995). And in: Collected Works on Theoretical
Biophysics (Inner Mongolia University
Press, 1997) pp485-491.
29. Fuzzy classification of nucleotide
sequences and bacterial evolution. Bull
Math Biol 57:527-537 (1995) Luo, Ji FM
& Li H
30. Maximum information principle &
evolution of nucleotide sequences. J Theor
Biol 174:131-136(1995) Luo & Bai GY
31. Conformation - transitional rate in
protein folding Int J Quant Chem. 54:243
(1995)
32. The correlation spectrum of nucleotide
sequences - How to extract signals from
background noise. Acta Sci. Natur. Univ.
Intramongolicae 26, 419-426(1995). Luo
& Ji FM
33. Study on the growth rates and growth
habits of ice crystal in solution of antifreeze
(glyco) proteins. Chemical Physics Letters
263: 651-654 (1996). Li QZ & Luo
34. On production of the chirality of
biogenetic material in the early earth.
In:
《Proccedings of 1st Int. Conference on
Circumstellar Habitable Zones 》(Travis
House Pub. 1996) p467
35. A model of molecular evolution based
on the statistical analysis of nucleotide
sequences. In《Physics Theory in Biology》(World
Scientific,1996).
36. The relation between codon usage,
base correlation and gene expression level
in Escherichia coli and yeast. J. Theor.
Biol 181: 111 (1996). Li H & Luo
37. A lattice model of nascent peptide
folding. Acta Sci. Natur. Univ. Intramongolicae
27,
333 - 342 (1996). Lee WJ & Luo
38. Periodicity of base correlation in
nucleotide sequence. Physical Review E56,
848-851 (1997)
Lee WJ & Luo
39. Preferential mode analysis of DNA
sequence J. Theor. Biol. 188, 343-353
(1997)
Luo & Ji FM
40. The statistical correlation of nucleotides
in DNA sequences. Progress in Physics
17, 320-346 (1997) (in Chinese)
41. Statistical correlation of nucleotides
in a DNA sequence. Physical Review E 58:861-871
(1998) Luo, Lee WJ, Jia LJ, Ji FM, &
Tsai L
42. The clustering of amino acid composition,
the structural classes of proteins and
their prediction. Acta Biophysica Sinica
14，729-736 （1998）(in Chinese) Li XQ &
Luo
43. Sequence-dependent DNA local structure
and DNA curvature Acta Biophysica Sinica
15，439-444 （1999） (in Chinese) Tsai L
& Luo
44.. Recognition and architecture of the
framework structure of protein. Proteins
39:9-25(2000)
45. A hypercycle theory of proliferation
of viruses and resistance to the viruses
of transgenic plant. J. Theor. Biol. 204:
453-465 (2000). Ji FM & Luo
46. A statistical mechanical model for
predicting B-DNA curvature and flexibility.
J. Theor. Biol. 207: 177 (2000). Tsai
L & Luo
47. A statistical-mechanical model of
DNA flexibility. Acta Biophysica Sinica
16，595-601（2000）(in Chinese) Tsai L &
Luo
48. Some universal properties of molecular
evolution. Invited talk at Symposium on
Theoretical Biophysics. (Wuhan, China,
1999). Acta Sci. Natur. Univ. Intramongolicae
31, 41-46 (2000)
49. Adsorption kinetics in the solution
of a thermal hysteresis protein. Chem.
Phys. Lett. 320, 335-338 (2000) Li QZ
& Luo
50. Dialogue on modern scientific tradition
and paradigm. Physics Teaching 22, 2-4
(2000) (in Chinese)
51. Evolutionary stability of the genetic
code. Progress in Physics 21, 66-87 (2001)
52. Reconstruction of evolutionary tree
based on information about short-range
correlation of nucleotides in gene sequence.
Acta Sci. Natur. Univ. Intramongolicae
32, 32-41 (2001).
Luo, Ji FM, Shieh LC& Lee HC
53. Coding rules for amino acids in the
genetic code - The genetic code is a minimal
code of mutational deterioration. Origins
of Life 32: 23 (2002). Luo & Li XQ
54. Construction of genetic code from
evolutionary stability. Biosystems 65:81
(2002)
Luo & Li XQ
55. Sequence-dependent flexibility in
promoter sequences. J. Biomol. Struc.
& Dynamics 20: 127 (2002) Tsai L,
Luo LF
56. A chemical kinetic theory on muscle
contraction and spontaneous oscillation.
Chemical Phys Letters 363:471-478.(2002).
Guo WS, Luo LF & Li QZ
57. The definition and recognition of
protein structural class. Progr. in Biochem.
and Biophys. 29:124-127 (in Chinese) (2002)
Li XQ & Luo
58. The recognition of protein structural
class. Progr. Biochem. Biophys. 29: 938-941
(in Chinese) (2002). Li XQ & Luo
59. Study on the model for regulation
of the allosteric enzyme activity. Chinese
Journal of Chemistry 20:1506-1513 (2002).
Li QZ, Luo & Zhang LR.
60. Biochirality as an indicator of the
origin of life - A piece of dark cloud
in the blue sky of 21 century science.
Acta Sci. Natur. Univ. Intramongolicae
33, 527-531. (2002)
61. Conserved words in 16S rRNA deduced
from evolutionary tree reconstruction.
Acta Sci. Natur. Univ. Intramongolicae
33, 36-42 (2002) Luo & Jia MW
62. Search for evolution-related-oligonucleotides
and conservative words in rRNA sequences.
Proceedings of the IEEE computer society
conference on bioinformatics (CSB'03)
468-469 (2003) Luo, Hsieh LC, Ji FM, Jia
MW & Lee HC
63. Minimal model for genome evolution
and growth. Phys. Rev. Lett. 90: 018101-4(2003)
Hsieh LC, Luo, Ji FM & Lee HC
64. Genomes are large systems with
small system statistics. AAPPS Bulletin
13(2) 22-27 (2003)
Hsieh LC, Luo & Lee HC
65. A new model on the mechanochemical
actin-activated myosin ATPase cycle.
Progr. Biochem. Biophys. 30,216-220
(in Chinese) (2003). Guo WS & Luo
66. ORF organization and gene recognition
in the yeast genome. Comp. Funct. Genome
4: 318-328 (2003) Luo, Li H & Zhang
LR
67. Splice site prediction with quadratic
discriminant analysis using diversity
measure. Nucleic Acids Res. 31: 6214-6220
(2003). Zhang LR & Luo
68. The relation between translation
speed and protein secondary structure.
Acta Biochim. Biophys. 35: 193-196 (in
Chinese) (2003) Li XQ, Luo & Liu
CQ
69. Statistical correlation between
protein secondary structure and messenger
RNA stem-loop structure . Biopolymers
73: 16-26 (2004) Jia MW, Luo, &
Liu CQ
70. The abnormal preference of synonymous
codons for protein secondary structure.
Chinese J of Mol Biol. & Biochem.
19(4) 441-444 (2003) Li XQ, Luo &
Liu CQ
71. tRNA copy number is a factor affecting
the formation of protein secondary structure.
Acta Sci. Nat. Univ. Intramong. 34:518-529
(2003). Luo & Li XQ
(Co-authors are listed behind each paper)
B. Monographs
1. Quantum Field Theory (Jiangsu
Shanghai Science and Technology Publisher,
1990) (in Chinese)
2. Non-equilibrium Statistical Theory
(Inner Mongolia University Press, 1990)
(in Chinese)
3. A Physicist Looks at the Life (Hunan
Education Publisher, 1994) (in Chinese)
4. Collected Works on Theoretical Biophysics
(including 119 papers)
(Inner Mongolia University Press, 1997)
5. Proceedings of the International
Symposium on Theoretical Biophysics
and Biomathematics (Inner Mongolia University
Press, 1997)
6. Physical Aspects of Life Evolution.
Shanghai: Shanghai Science and Technology
Publisher (in Chinese). (2000) |
